PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009769411.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family GRAS
Protein Properties Length: 530aa    MW: 58826.1 Da    PI: 6.5098
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009769411.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS376.63.1e-1151575291374
            GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar...svselykalppsetseknsseelaalklfsevsPilk 92 
                     lv+lL++cAeav+ +d+++a+ lL++l+  a   g+++qR+a++f+++La rla     ++  y a+pp +++++  +++ aal+l++e++P ++
  XP_009769411.1 157 LVQLLITCAEAVACRDKSRASVLLSELRASALVFGTSFQRVASCFVQGLADRLALvqpLGTVGYVAIPPMNKTDMALEKKEAALRLLYEICPHIQ 251
                     689*************************************************987312233457788999999999999**************** PP

            GRAS  93 fshltaNqaIleavegeervHiiDfdis....qGlQWpaLlqaLasRpegpp.slRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlv 182
                     f+h++aN  Ilea+ege+ +H++D+++s    +G QW  L+q+La+ +++pp +lRiT+vg+    + e+ + +g+ L+ +A++lg+++ef++ v
  XP_009769411.1 252 FGHFVANCSILEAFEGESFIHVVDLGMSvglpHGHQWRRLIQSLANGTGQPPhRLRITAVGQ----NIEKFQIIGDELEAYARSLGINLEFSA-V 341
                     *************************9884444678***********99776659********....99*************************.7 PP

            GRAS 183 akrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpr 277
                     +++le+l++++++v  gE+l+Vn++lqlh +++es    +   +vL++v +lsPk++v+veq+++hn++ Fl rf+eal+yysa+fdsl++ lp+
  XP_009769411.1 342 ESNLENLTPKDIKVYDGEVLVVNSILQLHCVVKESRGALN---SVLQVVHELSPKILVLVEQDSSHNGPFFLGRFMEALHYYSAIFDSLDVMLPK 433
                     9*******************************88877777...8*************************************************** PP

            GRAS 278 eseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvS 371
                      +  r+k+E++++++ei+n+v+ceg +r+erhe++ +Wr+r+++aGF+++p++  +++qak  l+kv+  +g+++ ee+g+lvlgWk++p+v++S
  XP_009769411.1 434 YDTRRAKIEQFYFAEEIKNIVSCEGPARVERHERVDQWRRRMSRAGFQAAPIK--MVSQAKQWLAKVNaYQGFTITEEKGCLVLGWKSKPIVAAS 526
                     ***************************************************96..79***********9************************** PP

            GRAS 372 aWr 374
                     +W+
  XP_009769411.1 527 CWK 529
                     **8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098557.893131510IPR005202Transcription factor GRAS
PfamPF035141.1E-112157529IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 530 aa     Download sequence    Send to blast
MTYDMVTSFL SLEPCNDDKI VYDSLENGLY LSHKELAYSL NPYTAVFKRN AASMFSNLSN  60
ESGDFKRLRR TPSLGESLGS NSISFYSDSS SSSSGGGSSI PRNDSTNSVN SLQLAPGLHF  120
RDHVWALNQR YLAAEAIEEA AADIISQEEE NGEGVKLVQL LITCAEAVAC RDKSRASVLL  180
SELRASALVF GTSFQRVASC FVQGLADRLA LVQPLGTVGY VAIPPMNKTD MALEKKEAAL  240
RLLYEICPHI QFGHFVANCS ILEAFEGESF IHVVDLGMSV GLPHGHQWRR LIQSLANGTG  300
QPPHRLRITA VGQNIEKFQI IGDELEAYAR SLGINLEFSA VESNLENLTP KDIKVYDGEV  360
LVVNSILQLH CVVKESRGAL NSVLQVVHEL SPKILVLVEQ DSSHNGPFFL GRFMEALHYY  420
SAIFDSLDVM LPKYDTRRAK IEQFYFAEEI KNIVSCEGPA RVERHERVDQ WRRRMSRAGF  480
QAAPIKMVSQ AKQWLAKVNA YQGFTITEEK GCLVLGWKSK PIVAASCWKC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A6e-491575294375GRAS family transcription factor containing p
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755150.0HG975515.1 Solanum lycopersicum chromosome ch03, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009769411.10.0PREDICTED: DELLA protein RGL1-like
RefseqXP_016495537.10.0PREDICTED: DELLA protein RGL1-like
TrEMBLM1B8B10.0M1B8B1_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000394550.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA81672130
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14920.14e-76GRAS family protein